Open AccessSPOT DETECTION METHODS IN FLUORESCENCE MICROSCOPY IMAGING: A REVIEW
Author(s) -
Matsilele Mabaso,
Daniel Withey,
Bhekisipho Twala
Publication year - 2018
Publication title -
image analysis and stereology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.237
H-Index - 27
eISSN - 1854-5165
pISSN - 1580-3139
DOI - 10.5566/ias.1690
Subject(s) - microscopy , fluorescence microscope , computer science , benchmark (surveying) , tracking (education) , artificial intelligence , fluorescence lifetime imaging microscopy , computer vision , fluorescence , optics , physics , cartography , geography , psychology , pedagogy
Fluorescence microscopy imaging has become one of the essential tools used by biologists to visualize and study intracellular particles within a cell. Studying these particles is a long-term research effort in the field of microscopy image analysis, consisting of discovering the relationship between the dynamics of particles and their functions. However, biologists are faced with challenges such as the counting and tracking of these intracellular particles. To overcome the issues faced by biologists, tools which can extract the location and motion of these particles are essential. One of the most important steps in these analyses is to accurately detect particle positions in an image, termed spot detection. The detection of spots in microscopy imaging is seen as a critical step for further quantitative analysis. However, the evaluation of these microscopic images is mainly conducted manually, with automated methods becoming popular. This work presents some advances in fluorescence microscopy image analysis, focusing on the detection methods needed for quantifying the location of these spots. We review several existing detection methods in microscopy imaging, along with existing synthetic benchmark datasets and evaluation metrics.