Open AccessWhole Genome Sequence of Sphingobacterium sp. G1-14, a Strain With Effective Paichongding Biodegradation
Author(s) -
Peng Yin,
Suyu Liu,
Xingke Wu
Publication year - 2019
Publication title -
journal of biology and life science
Language(s) - English
Resource type - Journals
ISSN - 2157-6076
DOI - 10.5296/jbls.v10i1.14000
Subject(s) - whole genome sequencing , strain (injury) , genome , gene , biology , mutant , gc content , genetics , sequence (biology) , gene sequence , computational biology , 16s ribosomal rna , anatomy
In this study, we obtained a Paichongding (RR/SS-IPP) degrading Sphingobacterium sp. G1-14 by UV irradiation of the original strain G1-13. This new mutant strain showed excellent RR/SS-IPP degradation performance, and the degradation of ratio was up to 30 per cent after 7 days. Subsequently, we determined the mutant strain G 1-14 as Sphingobacterium based on the phylogenomic analyses. The circular chromosome of Sphingobacterium sp. G1-14 was presented in this paper by Illumina Hiseq platform combined with a third-generation sequencing platform. 5583 protein-coding sequences of the complete genome sequence were obtained, which is beneficial to deduced genes related to RR/SS-IPP degradation.