Open AccessGenetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F 2 and F 5 Generation‐based Genetic Maps Derived from ‘Tifrunner’ × ‘GT‐C20’ in Peanut
Author(s) -
Wang Hui,
Pandey Manish K.,
Qiao Lixian,
Qin Hongde,
Culbreath Albert K.,
He Guohao,
Varshney Rajeev K.,
Scully Brian T.,
Guo Baozhu
Publication year - 2013
Publication title -
the plant genome
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.403
H-Index - 41
ISSN - 1940-3372
DOI - 10.3835/plantgenome2013.05.0018
Subject(s) - quantitative trait locus , biology , tomato spotted wilt virus , genetics , locus (genetics) , thrips , family based qtl mapping , population , gene mapping , plant disease resistance , gene , horticulture , plant virus , virus , demography , sociology , chromosome
One mapping population derived from Tifrunner × GT‐C20 has shown great potential in developing a high density genetic map and identifying quantitative trait loci (QTL) for important disease resistance, tomato spotted wilt virus (TSWV) and leaf spot (LS). Both F 2 and F 5 generation‐based genetic maps were previously constructed with 318 and 239 marker loci, respectively. Higher map density could be achieved with the F 2 map (5.3 cM per locus) as compared to the F 5 (5.7 cM per locus). Quantitative trait loci analysis using multi‐environment phenotyping data from F 8 and higher generations for disease resistance identified 54 QTL in the F 2 map including two QTL for thrips (12.14–19.43% phenotypic variation explained [PVE]), 15 for TSWV (4.40–34.92% PVE), and 37 for LS (6.61–27.35% PVE). Twenty‐three QTL could be identified in the F 5 map including one QTL for thrips (5.86% PVE), nine for TSWV (5.20–14.14% PVE), and 13 for LS (5.95–21.45% PVE). Consistent QTL identified in each map have shown higher phenotypic variance than nonconsistent QTL. As expected, the number of QTL and their estimates of phenotypic variance were lower in the F 5 map. This is the first QTL study reporting novel QTL for thrips, TSWV, and LS in peanut ( Arachis hypogaea L.), and therefore, future studies will be conducted to refine these QTL.