Open AccessFigs S1-S9
Author(s) -
P.W. Crous
Publication year - 2020
Publication title -
fungal systematics and evolution
Language(s) - English
Resource type - Journals
eISSN - 2589-3831
pISSN - 2589-3823
DOI - 10.3114/fuse.2021.07.04_supp1
Subject(s) - genbank , phylogenetic tree , bayesian probability , tree (set theory) , sequence (biology) , biology , multiple sequence alignment , computational biology , combinatorics , evolutionary biology , genetics , artificial intelligence , mathematics , sequence alignment , computer science , gene , peptide sequence
Fig. S1. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the ITS sequence alignment of sequences generated in this study and reference sequences from NCBI GenBank. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S2. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the LSU sequence alignment of sequences generated in this study and reference sequences from NCBI GenBank. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S3. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the act sequence alignment of sequences generated in this study and reference sequences from NCBI GenBank. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S4. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the rpb1 sequence alignment of sequences generated in this study and reference sequences from NCBI GenBank. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S5. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the rpb2 sequence alignment of sequences generated in this study and reference sequences from NCBI GenBank. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S6. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the tef1 sequence alignment of sequences generated in this study and reference sequences from NCBI GenBank. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S7. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the full set 6-gene (ITS, LSU, act , tef1 , rpb1 , rpb2 ) sequence alignment. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S8. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the full set 4-gene (ITS, LSU, act , tef1 ) sequence alignment. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072). Fig. S9. Consensus phylogram (50 % majority rule) resulting from a Bayesian analysis of the full set 2-gene ( rpb1 , rpb2 ) sequence alignment. Bayesian posterior probabilities (PP) > 0.85 are shown at the nodes and thickened lines represent nodes with PP = 1.00. The scale bar represents the expected changes per site. Species and culture collection numbers are indicated. The tree was rooted to Ascocoryne sarcoides (culture NRRL 50072).