Open AccessA DNA Sequence Analysis of Helicobacter pylori in Jeddah City, Western Saudi Arabia
Author(s) -
Abrar A. M. Almehmadi,
Faten A. S. Alsulaimany
Publication year - 2020
Publication title -
international journal of research in pharmaceutical sciences
Language(s) - English
Resource type - Journals
ISSN - 0975-7538
DOI - 10.26452/ijrps.v11i2.2339
Subject(s) - caga , helicobacter pylori , virulence , gene , microbiology and biotechnology , biology , sequence analysis , 16s ribosomal rna , polymerase chain reaction , pathogenicity island , genetics
Helicobacter pylori are the type of Gram-negative bacteria which colonize the mucous lining of the human stomach. These bacteria have two major virulence factors: (vacuolating cytotoxin A gene) and (cytotoxin-associated A gene). This study aimed to provide data to determine the prevalent virulence factors (vacA and cagA genes) in Jeddah city, western Saudi Arabia, by sequence analysis. This study included 60 patients with symptoms similar to H. pylori infection. H. pylori were identified by using the 16s rRNA sequence. Then, the screening for specific genes in H. pylori (vacA and cagA) was done by using automated DNA sequencing analysis, and the DNA sequences were compared by BLAST and sequence alignment of the vacA nucleotides that are present in all H. pylori strains using those already reported in GeneBank from various studies. Results indicated that H. pylori infection was detected in 13.3%, while 86.7% were negative samples in our study patients. Interestingly, the vacA gene was found in 8.3%, while the cagA gene was not appear in patient. Also, the female prevalence rate was higher than males (11.7% female versus 1.7% males), and the highest infection was between age 40-49 by 6.7%. In conclusion, this study revealed that the vacA gene was spread in the patients infected with H. pylori in Jeddah, while the cagA gene was not appear in any isolate.