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Evaluation of Reference Genes for Quantitative RT‐PCR in Lolium perenne
Author(s) -
Martin Ruth C.,
Hollenbeck Vicky G.,
Dombrowski James E.
Publication year - 2008
Publication title -
crop science
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.76
H-Index - 147
eISSN - 1435-0653
pISSN - 0011-183X
DOI - 10.2135/cropsci2007.10.0597
Subject(s) - housekeeping gene , biology , reference genes , gene , lolium perenne , real time polymerase chain reaction , gene expression , genetics , microbiology and biotechnology , ribosomal rna , polymerase chain reaction , perennial plant , botany
Quantitative real‐time reverse transcription‐polymerase chain reaction (RT‐PCR) provides an important tool for analyzing gene expression if proper internal standards are used. The aim of this study was to identify and evaluate reference genes for use in real‐time quantitative RT‐PCR in perennial ryegrass ( Lolium perenne L.) during plant development. Partial sequences of nine L. perenne housekeeping genes were obtained by RT‐PCR using degenerate primers designed from the corresponding genes in closely related species. Primers for quantitative RT‐PCR were designed based on partial sequences. The housekeeping genes were evaluated for their expression stability in different tissues at various stages of development. The analysis found that eEF‐1 α and eIF‐4a were the most stable and β ‐TUB was the least stable of the genes tested when all tissues were analyzed together. Analysis by geNorm indicated that the four most stably expressed housekeeping genes ( eEF‐1α , eIF‐4a , 25S rRNA , and GAPDH ) should be utilized when normalizing gene expression during plant developmental studies. For root crown tissues at different stages of development, eIF‐4a and 25S rRNA were the most stably expressed of the housekeeping genes tested. In leaf tissues, eEF‐1α and UBQ5 were the most stably expressed of the housekeeping genes tested. We found that using two housekeeping genes as reference genes is sufficient during RT‐PCR gene expression studies when analyzing either root crown or leaf tissues during different stages of development.