Open AccessFolding initiation sites and protein folding.
Author(s) -
Michał Dadlez
Publication year - 1999
Publication title -
acta biochimica polonica
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.452
H-Index - 78
eISSN - 1734-154X
pISSN - 0001-527X
DOI - 10.18388/abp.1999_4126
Subject(s) - folding (dsp implementation) , protein folding , limiting , phi value analysis , downhill folding , chemistry , folding funnel , lattice protein , native state , contact order , biophysics , crystallography , biochemistry , biology , mechanical engineering , electrical engineering , engineering
The paper discusses the role of local structural preferences of protein segments in the folding of proteins. First a short overview of the local, secondary structures detected in peptides, protein fragments, denatured proteins and early folding intermediates is given. Next the discussion of their role in protein folding is presented based on recent literature and data obtained in our laboratory. In conclusion it is pointed out that, during folding, local structures populated at low levels in denatured state may facilitate the crossing of the folding transition state barrier, and consequently accelerate the rate limiting step in folding. However, the data show that this effect does not follow simple rules.