Open AccessHigh-throughput nanopore sequencing of Treponema pallidum tandem repeat genes arp and tp0470 reveals clade-specific patterns and recapitulates global whole genome phylogeny
Author(s) -
Nicole A P Lieberman,
Thaddeus D. Armstrong,
Benjamin I. Chung,
Daniel Pfalmer,
Christopher M. Hennelly,
Austin M. Haynes,
Emily Romeis,
Qianqiu Wang,
Ruili Zhang,
Caixia Kou,
Giulia Ciccarese,
Ivano Dal Conte,
Marco Cusini,
Filippo Drago,
Shuichi Nakayama,
Kenichi Lee,
Makoto Ohnishi,
Kelika A. Konda,
Silver K. Vargas,
María Eguiluz,
Carlos Cáceres,
Jeffrey D. Klausner,
Oriol Mitjà,
Anne Rompalo,
Fiona Mulcahy,
Edward W. Hook,
Irving Hoffman,
Mitch M. Matoga,
Heping Zheng,
Bin Yang,
Eduardo LópezMedina,
Lady G. Ramírez,
Justin D. Radolf,
Kelly L. Hawley,
Juan C. Salazar,
Sheila A. Lukehart,
Arlene C. Seña,
Jonathan B. Parr,
Lorenzo Giacani,
Alexander L. Greninger
Publication year - 2022
Publication title -
carolina digital repository (university of north carolina at chapel hill)
Language(s) - English
DOI - 10.17615/cxm8-pr61
Subject(s) - nanopore sequencing , biology , treponema , clade , genome , tandem repeat , phylogenetics , dna sequencing , whole genome sequencing , gene , genetics , computational biology , minion , phylogenetic tree , evolutionary biology , virology , syphilis , human immunodeficiency virus (hiv)