Open AccessApplication of principal component analysis on temporal evolution of COVID-19
Author(s) -
Ashadun Nobi,
Kamrul Hasan Tuhin,
Jae Woo Lee
Publication year - 2021
Publication title -
plos one
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.99
H-Index - 332
ISSN - 1932-6203
DOI - 10.1371/journal.pone.0260899
Subject(s) - principal component analysis , covid-19 , eigenvalues and eigenvectors , pandemic , statistics , time series , plot (graphics) , demography , mathematics , biology , medicine , physics , virology , outbreak , pathology , sociology , infectious disease (medical specialty) , disease , quantum mechanics
The COVID-19 is one of the worst pandemics in modern history. We applied principal component analysis (PCA) to the daily time series of the COVID-19 death cases and confirmed cases for the top 25 countries from April of 2020 to February of 2021. We calculated the eigenvalues and eigenvectors of the cross-correlation matrix of the changes in daily accumulated data over monthly time windows. The largest eigenvalue describes the overall evolution dynamics of the COVID-19 and indicates that evolution was faster in April of 2020 than in any other period. By using the first two PC coefficients, we can identify the group dynamics of the COVID-19 evolution. We observed groups under critical states in the loading plot and found that American and European countries are represented by strong clusters in the loading plot. The first PC plays an important role and the correlations (C 1 ) between the normalized logarithmic changes in deaths or confirmed cases and the first PCs may be used as indicators of different phases of the COVID-19. By varying C 1 over time, we identified different phases of the COVID-19 in the analyzed countries over the target time period.