Open AccessFunctional relevance for associations between osteoporosis and genetic variants
Author(s) -
Kun Liu,
Lijun Tan,
Peng Wang,
Xiang-Ding Chen,
Lihua Julie Zhu,
Qin Zeng,
Yumei Hu,
HongWen Deng
Publication year - 2017
Publication title -
plos one
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.99
H-Index - 332
ISSN - 1932-6203
DOI - 10.1371/journal.pone.0174808
Subject(s) - osteoporosis , single nucleotide polymorphism , expression quantitative trait loci , genome wide association study , bioinformatics , genetic association , biology , snp , medicine , genetics , gene , genotype
Osteoporosis is characterized by increased bone loss and deterioration of bone microarchitecture, which will lead to reduced bone strength and increased risk of fragility fractures. Previous studies have identified many genetic loci associated with osteoporosis, but functional mechanisms underlying the associations have rarely been explored. In order to explore the potential molecular functional mechanisms underlying the associations for osteoporosis, we performed integrative analyses by using the publically available datasets and resources. We searched 128 identified osteoporosis associated SNPs ( P <10 −6 ), and 8 SNPs exert cis-regulation effects on 11 eQTL target genes. Among the 8 SNPs, 2 SNPs ( RPL31 rs2278729 and LRP5 rs3736228) were confirmed to impact the expression of 3 genes ( RPL31 , CPT1A and MTL5 ) that were differentially expressed between human subjects of high BMD group and low BMD group. All of the functional evidence suggested the important functional mechanisms underlying the associations of the 2 SNPs (rs2278729 and rs3736228) and 3 genes ( RPL31 , CPT1A and MTL5 ) with osteoporosis. This study may provide novel insights into the functional mechanisms underlying the osteoporosis associated genetic variants, which will help us to comprehend the potential mechanisms underlying the genetic association for osteoporosis.