Open AccessFunctional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis
Author(s) -
Ian N. Boys,
Katrina B. Mar,
John W. Schoggins
Publication year - 2021
Publication title -
plos genetics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.587
H-Index - 233
eISSN - 1553-7404
pISSN - 1553-7390
DOI - 10.1371/journal.pgen.1009578
Subject(s) - biology , xenopus , vertebrate , genome , function (biology) , rna , effector , clade , genetics , computational biology , evolutionary biology , gene , microbiology and biotechnology , phylogenetics
The Receptor Transporter Protein (RTP) family is present in most, if not all jawed vertebrates. Most of our knowledge of this protein family comes from studies on mammalian RTPs, which are multi-function proteins that regulate cell-surface G-protein coupled receptor levels, influence olfactory system development, regulate immune signaling, and directly inhibit viral infection. However, mammals comprise less than one-tenth of extant vertebrate species, and our knowledge about the expression, function, and evolution of non-mammalian RTPs is limited. Here, we explore the evolutionary history of RTPs in vertebrates. We identify signatures of positive selection in many vertebrate RTP clades and characterize multiple, independent expansions of the RTP family outside of what has been described in mammals. We find a striking expansion of RTPs in the African clawed frog, Xenopus laevis , with 11 RTPs in this species as opposed to 1 to 4 in most other species. RNA sequencing revealed that most X . laevis RTPs are upregulated following immune stimulation. In functional assays, we demonstrate that at least three of these X . laevis RTPs inhibit infection by RNA viruses, suggesting that RTP homologs may serve as antiviral effectors outside of Mammalia.