Open AccessFractal propagation method enables realistic optical microscopy simulations in biological tissues
Author(s) -
Adam K. Glaser,
Ye Chen,
Jonathan Liu
Publication year - 2016
Publication title -
optica
Language(s) - Uncategorized
Resource type - Journals
SCImago Journal Rank - 5.074
H-Index - 107
ISSN - 2334-2536
DOI - 10.1364/optica.3.000861
Subject(s) - optics , refractive index , fractal , gaussian beam , microscopy , light scattering , diffraction , biophotonics , bessel beam , robustness (evolution) , materials science , biological system , scattering , physics , beam (structure) , photonics , chemistry , mathematics , mathematical analysis , biochemistry , biology , gene
Current simulation methods for light transport in biological media have limited efficiency and realism when applied to three-dimensional microscopic light transport in biological tissues with refractive heterogeneities. We describe here a technique which combines a beam propagation method valid for modeling light transport in media with weak variations in refractive index, with a fractal model of refractive index turbulence. In contrast to standard simulation methods, this fractal propagation method (FPM) is able to accurately and efficiently simulate the diffraction effects of focused beams, as well as the microscopic heterogeneities present in tissue that result in scattering, refractive beam steering, and the aberration of beam foci. We validate the technique and the relationship between the FPM model parameters and conventional optical parameters used to describe tissues, and also demonstrate the method's flexibility and robustness by examining the steering and distortion of Gaussian and Bessel beams in tissue with comparison to experimental data. We show that the FPM has utility for the accurate investigation and optimization of optical microscopy methods such as light-sheet, confocal, and nonlinear microscopy.