Open AccessWavefront control in adaptive microscopy using Shack-Hartmann sensors with arbitrarily shaped pupils
Author(s) -
Bing Dong,
Martin J. Booth
Publication year - 2018
Publication title -
optics express
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.394
H-Index - 271
ISSN - 1094-4087
DOI - 10.1364/oe.26.001655
Subject(s) - wavefront , optics , adaptive optics , wavefront sensor , deformable mirror , pupil , physics , exit pupil , tilt (camera) , zernike polynomials , computer science , mathematics , geometry
In adaptive optical microscopy of thick biological tissue, strong scattering and aberrations can change the effective pupil shape by rendering some Shack-Hartmann spots unusable. The change of pupil shape leads to a change of wavefront reconstruction or control matrix that should be updated accordingly. Modified slope and modal wavefront control methods based on measurements of a Shack-Hartmann wavefront sensor are proposed to accommodate an arbitrarily shaped pupil. Furthermore, we present partial wavefront control methods that remove specific aberration modes like tip, tilt and defocus from the control loop. The proposed control methods were investigated and compared by simulation using experimentally obtained aberration data. The performance was then tested experimentally through closed-loop aberration corrections using an obscured pupil.