Open AccessWhole slide imaging system using deep learning-based automated focusing
Author(s) -
Tathagato Rai Dastidar,
Renu Ethirajan
Publication year - 2019
Publication title -
biomedical optics express
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.362
H-Index - 86
ISSN - 2156-7085
DOI - 10.1364/boe.379780
Subject(s) - computer science , convolutional neural network , artificial intelligence , microscope , focus (optics) , deep learning , digital pathology , computer vision , autofocus , microscopy , optics , physics
The auto focusing system, which involves moving a microscope stage along a vertical axis to find an optimal focus position, is the chief component of an automated digital microscope. Current automated focusing algorithms, especially those deployed in cost effective microscopy systems, often cannot match the efficiency of a skilled human operator in keeping a sample in focus. This work presents an auto focusing system that utilises the recent advances in machine learning, namely deep convolutional neural networks (CNN). It improves upon prior work in this domain. The results of the focusing algorithm are demonstrated on an open data set. We describe the practical implementation of this method on a low cost digital microscope to create a whole slide imaging system (WSI). Results of a clinical study using this WSI system are presented. The study demonstrates the efficacy of this system in a practical scenario.