High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall | Zendy

Han Ming Gan | Zendy; Melvin Vun Jye Lee | Zendy; Michael A. Savka | Zendy

Open Access

High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall

Author(s) -

Han Ming Gan,

Melvin Vun Jye Lee,

Michael A. Savka

Publication year - 2018

Publication title -

microbiology resource announcements

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.383

H-Index - 35

ISSN - 2576-098X

DOI - 10.1128/mra.01045-18

Subject(s) - contig , whole genome sequencing , biology , genome , sequence assembly , illumina dye sequencing , strain (injury) , gall , vitis vinifera , genetics , botany , computational biology , gene , transcriptome , gene expression , anatomy

Using Illumina and Nanopore reads, we assembled a high-quality draft genome sequence of Allorhizobium vitis K309 T (= ATCC 49767 T , = NCPPB 3554 T ), a phytopathogenic strain isolated from a grapevine in Australia. The hybrid approach generated 50% fewer contigs and a 3-fold increase in the N 50 value compared with the previous Illumina-only assembly.

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