octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine | Zendy

Jennifer Chang | Zendy; Tavis K. Anderson | Zendy; Michael A. Zeller | Zendy; Phillip C. Gauger | Zendy; Amy L. Vincent | Zendy

Open Access

octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine

Author(s) -

Jennifer Chang,

Tavis K. Anderson,

Michael A. Zeller,

Phillip C. Gauger,

Amy L. Vincent

Publication year - 2019

Publication title -

microbiology resource announcements

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.383

H-Index - 35

ISSN - 2576-098X

DOI - 10.1128/mra.00673-19

Subject(s) - clade , biology , lineage (genetic) , antigenic drift , gene , genetic diversity , virus , influenza a virus , evolutionary biology , phylogenetics , genetics , virology , computational biology , medicine , population , environmental health

The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.

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