Open AccessoctoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine
Author(s) -
Jennifer Chang,
Tavis K. Anderson,
Michael A. Zeller,
Phillip C. Gauger,
Amy L. Vincent
Publication year - 2019
Publication title -
microbiology resource announcements
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.383
H-Index - 35
ISSN - 2576-098X
DOI - 10.1128/mra.00673-19
Subject(s) - clade , biology , lineage (genetic) , antigenic drift , gene , genetic diversity , virus , influenza a virus , evolutionary biology , phylogenetics , genetics , virology , computational biology , medicine , population , environmental health
The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.