LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline | Zendy

Hatim Almutairi | Zendy; Michael D. Urbaniak | Zendy; Michelle Bates | Zendy; Narissara Jariyapan | Zendy; Godwin Kwakye-Nuako | Zendy; Vanete ThomazSoccol | Zendy; Waleed S. Al-Salem | Zendy; Rod J. Dillon | Zendy; Paul A. Bates | Zendy; Derek Gatherer | Zendy

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LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline

Author(s) -

Hatim Almutairi,

Michael D. Urbaniak,

Michelle Bates,

Narissara Jariyapan,

Godwin Kwakye-Nuako,

Vanete ThomazSoccol,

Waleed S. Al-Salem,

Rod J. Dillon,

Paul A. Bates,

Derek Gatherer

Publication year - 2021

Publication title -

microbiology resource announcements

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.383

H-Index - 35

ISSN - 2576-098X

DOI - 10.1128/mra.00439-21

Subject(s) - sequence assembly , genome , pipeline (software) , subfamily , annotation , porting , computational biology , biology , chromosome , computer science , genome project , genetics , gene , software , programming language , gene expression , transcriptome

We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).

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