Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader | Zendy

Yoshiyuki Ohtsubo | Zendy; Shouta oyama | Zendy; Yuji Nagata | Zendy; Mitsuru Numata | Zendy; Keiko Tsuchikane | Zendy; Akira Hosoyama | Zendy; Atsushi Yamazoe | Zendy; Masataka Tsuda | Zendy; Nobuyuki Fujita | Zendy; Fusako Kawai | Zendy

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Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader

Author(s) -

Yoshiyuki Ohtsubo,

Shouta oyama,

Yuji Nagata,

Mitsuru Numata,

Keiko Tsuchikane,

Akira Hosoyama,

Atsushi Yamazoe,

Masataka Tsuda,

Nobuyuki Fujita,

Fusako Kawai

Publication year - 2016

Publication title -

genome announcements

Language(s) - English

Resource type - Journals

ISSN - 2169-8287

DOI - 10.1128/genomea.00529-16

Subject(s) - strain (injury) , whole genome sequencing , polyethylene glycol , biology , food science , genome , genetics , gene , biochemistry , anatomy

We determined the complete genome sequence of Sphingopyxis macrogoltabida strain 203N, a polyethylene glycol degrader. Because the PacBio assembly (285× coverage) seemed to be full of nucleotide-level mismatches, the Newbler assembly of MiSeq mate-pair and paired-end data was used for finishing and the PacBio assembly was used as a reference. The PacBio assembly carried 414 nucleotide mismatches over 5,953,153 bases of the 203N genome.

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