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Lactic acid bacteria are widely distributed in the termite gut. Here, we report the draft genome sequence of Lactococcus sp. strain NtB2, which was isolated from the gut of a wood-feeding higher termite.

Draft Genome Sequence of Lactococcus sp. Strain NtB2 (JCM 32569), Isolated from the Gut of the Higher Termite Nasutitermes takasagoensis