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A collection of enhancer trap insertional mutants for functional genomics in tomato
Author(s) -
PérezMartín Fernando,
YusteLisbona Fernando J.,
Pineda Benito,
AngaritaDíaz María Pilar,
GarcíaSogo Begoña,
Antón Teresa,
Sánchez Sibilla,
Giménez Estela,
Atarés Alejandro,
FernándezLozano Antonia,
OrtízAtienza Ana,
GarcíaAlcázar Manuel,
Castañeda Laura,
Fonseca Rocío,
Capel Carmen,
Goergen Geraldine,
Sánchez Jorge,
Quispe Jorge L.,
Capel Juan,
Angosto Trinidad,
Moreno Vicente,
Lozano Rafael
Publication year - 2017
Publication title -
plant biotechnology journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.525
H-Index - 115
eISSN - 1467-7652
pISSN - 1467-7644
DOI - 10.1111/pbi.12728
Subject(s) - biology , gene , functional genomics , mutant , genetics , enhancer , genome , genomic library , transformation (genetics) , computational biology , genomics , gene expression , base sequence
Summary With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections are a valuable resource. In this sense, T‐ DNA collections allow for an easy and straightforward identification of the tagged gene, serving as the basis of both forward and reverse genetic strategies. This study reports on the phenotypic and molecular characterization of an enhancer trap T‐ DNA collection in tomato ( Solanum lycopersicum L.), which has been produced by Agrobacterium ‐mediated transformation using a binary vector bearing a minimal promoter fused to the uidA reporter gene. Two genes have been isolated from different T‐ DNA mutants, one of these genes codes for a UTP ‐glucose‐1‐phosphate uridylyltransferase involved in programmed cell death and leaf development, which means a novel gene function reported in tomato. Together, our results support that enhancer trapping is a powerful tool to identify novel genes and regulatory elements in tomato and that this T‐ DNA mutant collection represents a highly valuable resource for functional analyses in this fleshy‐fruited model species.

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