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Detection and Molecular Characterization of a 16SrII‐A* Phytoplasma in Grapefruit ( C itrus paradisi ) with Huanglongbing‐like Symptoms in C hina
Author(s) -
Lou Binghai,
Bai Xianjin,
Bai Yang,
Deng Chongling,
RoyChowdhury Moytri,
Chen Chuanwu,
Song Yaqin
Publication year - 2014
Publication title -
journal of phytopathology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.53
H-Index - 60
eISSN - 1439-0434
pISSN - 0931-1785
DOI - 10.1111/jph.12200
Subject(s) - phytoplasma , biology , primer (cosmetics) , amplicon , sequence analysis , microbiology and biotechnology , citrus paradisi , virology , polymerase chain reaction , gene , genetics , 16s ribosomal rna , restriction fragment length polymorphism , botany , rutaceae , chemistry , organic chemistry
In the year 2010, in a survey in G uangxi P rovince, C hina, to detect and characterize phytoplasmas in a huanglongbing ( HLB )‐infected grapefruit ( C itrus paradisi ) orchard, 87 leaf samples with symptoms of blotchy mottle were collected from symptomatic grapefruit trees, and 320 leaf samples from symptomless trees adjacent to the symptomatic trees. Nested polymerase chain reaction ( PCR ) using universal phytoplasma primer set P1/P7 followed by primer set f U 5/r U 3 identified 7 (8.0%) positive samples from symptomatic samples but none from symptomless samples. Of the 87 symptomatic samples, 77 (88.5%) were positive for ‘ C andidatus Liberibacter asiaticus’ and 5 for both phytoplasma and ‘ C a. L. asiaticus’. Sequence analysis indicated that seven 881‐bp amplicons, amplified by nested phytoplasma primer sets P1/P7 and f U 5/r U 3, shared 100.0% sequence identity with each other. Genome walking was then performed based on the 881 bp known sequences, and 5111 bp of upstream and downstream sequences were obtained. The total 5992 bp sequences contained a complete r RNA operon, composed of a 16S r RNA gene, a t RNA Ile gene, a 23S r RNA gene and a 5S r RNA gene followed by eight t RNA genes. Phylogenetic analysis and virtual restriction fragment length polymorphism analysis confirmed the phytoplasma was a variant (16SrII‐A*) of phytoplasma subgroup 16SrII‐A. As phytoplasmas were only detected in blotchy‐mottle leaves, the 16SrII‐A* phytoplasma identified was related to HLB ‐like symptoms.