z-logo
open-access-imgOpen Access
Interlaboratory Identification of Black Seabream ( S pondyliosoma cantharus ) as a Model Species on Basis of Polymerase Chain Reaction Targeting the Second Intron of the Parvalbumin Gene
Author(s) -
Laknerová Ivana,
Zdeňková Kamila,
Purkrtová Sabina,
Piknová Ľubica,
Vyroubalová Šárka,
Hanák Petr
Publication year - 2014
Publication title -
journal of food quality
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.568
H-Index - 43
eISSN - 1745-4557
pISSN - 0146-9428
DOI - 10.1111/jfq.12114
Subject(s) - amplicon , polymerase chain reaction , biology , computational biology , gene , amplicon sequencing , genetics , 16s ribosomal rna
An end‐point polymerase chain reaction ( PCR ) targeting the second intron in the protein‐coding region of the parvalbumin gene of black seabream ( S pondyliosoma cantharus ) was used to identify this fish species. The reproducibility of the method was tested by a collaborative study in which four laboratories participated. Twenty‐eight samples of isolated DNA from fish meat were tested in participating laboratories by the presented identification method. Nine samples were from black seabream and the remaining 19 were fish flesh from the reference panel. In parallel, six frozen samples of fish meat, where three were of black seabream and remaining three from the reference panel, were tested in the laboratories by this method after various DNA isolation procedures. The PCR ‐based method for species determination of black seabream presented in this study proved to be a reliable and independent on method of DNA isolation from meat among the isolation techniques used. Practical Applications This work deals with the interlaboratory assessment of a previously described end‐point polymerase chain reaction‐based method for fish species determination from fish flesh devoid of anatomical traits. The end‐point form of the test is simple enough to be broadly used by laboratories in the field. This novel approach based on species‐independent degenerate primers makes it possible, through the use of obtained amplicons, to design species‐specific primers, such as the ones tested here, in a quite straightforward manner. Therefore, the presented assay represents the first practical employment of a broader and more versatile approach capable of reacting in a relatively short time to fish species first emerging as new commodities on the market.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.
Having issues? You can contact us here