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Genetic relationships between feed efficiency and gut microbiome in pig lines selected for residual feed intake
Author(s) -
Aliakbari Amir,
Zemb Olivier,
Billon Yvon,
Barilly Céline,
Ahn Ingrid,
Riquet Juliette,
Gilbert Hélène
Publication year - 2021
Publication title -
journal of animal breeding and genetics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.689
H-Index - 51
eISSN - 1439-0388
pISSN - 0931-2668
DOI - 10.1111/jbg.12539
Subject(s) - biology , residual feed intake , lachnospiraceae , heritability , zoology , microbiome , genetic variation , genetic variability , feed conversion ratio , genetic diversity , genetics , 16s ribosomal rna , body weight , genotype , bacteria , population , demography , sociology , gene , firmicutes , endocrinology
This study aimed to evaluate the genetic relationship between faecal microbial composition and five feed efficiency (FE) and production traits, residual feed intake (RFI), feed conversion ratio (FCR), daily feed intake (DFI), average daily gain (ADG) and backfat thickness (BFT). A total of 588 samples from two experimental pig lines developed by divergent selection for RFI were sequenced for the 16 rRNA hypervariable V3‐V4 region. The 75 genera with less than 20% zero values (97% of the counts) and two α‐diversity indexes were analysed. Line comparison of the microbiota traits and estimations of heritability (h 2 ) and genetic correlations ( r g ) were analysed. A non‐metric multidimensional scaling showed line differences between genera. The α‐diversity indexes were higher in the LRFI line than in the HRFI line ( p < .01), with h 2 estimates of 0.19 ± 0.08 (Shannon) and 0.12 ± 0.06 (Simpson). Forty‐eight genera had a significant h 2 (>0.125). The r g of the α‐diversities indexes with production traits were negative. Some r g of genera belonging to the Lachnospiraceae , Ruminococcaceae , Prevotellaceae , Lactobacillaceae , Streptococcaceae , Rikenellaceae and Desulfovibrionaceae families significantly differed from zero ( p < .05) with FE traits, RFI (3), DFI (7) and BFT (11). These results suggest that a sizable part of the variability of the gut microbial community is under genetic control and has genetic relationships with FE, including diversity indicators. It offers promising perspectives for selection for feed efficiency using gut microbiome composition in pigs.