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ELECTROPHORETIC SEPARATION OF FUROCOUMARIN: DNA PHOTOADDUCTS
Author(s) -
Calvin Noel M.,
Hanawalt Philip C.
Publication year - 1984
Publication title -
photochemistry and photobiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.818
H-Index - 131
eISSN - 1751-1097
pISSN - 0031-8655
DOI - 10.1111/j.1751-1097.1984.tb04570.x
Subject(s) - furocoumarin , chemistry , adduct , chromatography , dna , electrophoresis , high performance liquid chromatography , resolution (logic) , polyacrylamide , enzymatic hydrolysis , hydrolysis , biochemistry , organic chemistry , polymer chemistry , artificial intelligence , computer science
We describe a new approach for quantitating furocoumarin adducts in DNA using enzymatic hydrolysis followed by resolution and recovery of the adduct molecules by electrophoresis on polyacrylamide tube gels. The resolution of this method approaches that of high pressure liquid chromatography but at a considerably lower cost. Digestion conditions using DNase II and spleen phosphodiesterase II to yield mononucleotides and adducted bases were worked out for DNA containing 8‐methoxypsoralen or 4′‐hydroxymethyl‐4,5′,8‐trimethylpsoralen. The phosphatase activity of DNase II was shown to be much more active on dNMPs than on adducted bases. This can be exploited to reduce the background of radioactivity from labeled dNMP's trailing into the adduct peaks, thereby increasing the effective sensitivity of the technique when quantitating adducts made with non‐radioactive drug in labeled DNA. Since resolution of adducts requires dense (30%) acrylamide gels, we have devised a method for making extremely uniform high density gels by polymerization under static pressure. A continuous collection apparatus was constructed to recover material from gels. The identity of the resolved species was determined by several different methods, including analysis by HPLC.