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The Discovery of Novel Vascular Endothelial Growth Factor Receptor Tyrosine Kinases Inhibitors: Pharmacophore Modeling, Virtual Screening and Docking Studies
Author(s) -
Yu Hui,
Wang Zhanli,
Zhang Liangren,
Zhang Jufeng,
Huang Qian
Publication year - 2007
Publication title -
chemical biology and drug design
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.59
H-Index - 77
eISSN - 1747-0285
pISSN - 1747-0277
DOI - 10.1111/j.1747-0285.2007.00488.x
Subject(s) - pharmacophore , virtual screening , docking (animal) , tyrosine kinase , receptor tyrosine kinase , vegf receptors , chemistry , vascular endothelial growth factor , pharmacology , kinase , computational biology , receptor , cancer research , biochemistry , biology , medicine , nursing
We have applied pharmacophore generation, database searching and docking methodologies to discover new structures for the design of vascular endothelial growth factor receptors, the tyrosine kinase insert domain‐containing receptor kinase inhibitors. The chemical function based pharmacophore models were built for kinase insert domain‐containing receptor kinase inhibitors from a set of 10 known inhibitors using the algorithm HipHop, which is implemented in the catalyst software. The highest scoring HipHop model consists of four features: one hydrophobic, one hydrogen bond acceptor, one hydrogen bond donor and one ring aromatic function. Using the algorithm CatShape within catalyst , the bound conformation of 4‐amino‐furo [2, 3‐d] pyrimidine binding to kinase insert domain‐containing receptor kinase was used to generate a shape query. A merged shape and hypothesis query that is in an appropriate alignment was then built. The combined shape and hypothesis model was used as a query to search Maybridge database for other potential lead compounds. A total of 39 compounds were retrieved as hits. The hits obtained were docked into kinase insert domain‐containing receptor kinase active site. One novel potential lead was proposed based on catalyst fit value, LigandFit docking scores, and examination of how the hit retain key interactions known to be required for kinase binding. This compound inhibited vascular endothelial growth factor stimulated kinase insert domain‐containing receptor phosphorylation in human umbilical vein endothelial cells.