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Probable role of β2‐adrenergic receptor gene haplotype in high‐altitude pulmonary oedema
Author(s) -
STOBDAN Tsering,
KUMAR Ram,
MOHAMMAD Ghulam,
THINLAS Tashi,
NORBOO Tsering,
IQBAL Mohammad,
PASHA M.A. Qadar
Publication year - 2010
Publication title -
respirology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.857
H-Index - 85
eISSN - 1440-1843
pISSN - 1323-7799
DOI - 10.1111/j.1440-1843.2010.01757.x
Subject(s) - haplotype , snp , single nucleotide polymorphism , medicine , genotype , genetics , gene , biology
Background and objective: The role of β2‐adrenergic receptor ( ADRB2 ) in pulmonary oxygenation has been ascertained during altitude acclimatization, physical performance and lung fluid clearance, but little is known about its association with high‐altitude pulmonary oedema (HAPE), a non‐cardiogenic pulmonary oedema. Methods: In a case–control study, 110 unrelated HAPE patients (HAPE‐p) and 143 unrelated HAPE‐resistant (HAPE‐r) controls matched on age and ethnicity were used to examine the association between eight single nucleotide polymorphisms (SNP) and disease. The eight SNP including three tag‐SNP were genotyped from promoter and exonic regions of ADRB2 . Robust methods for predicting geneotype–phenotype interactions, for example, multidimensional reduction (MDR) and moving‐window haplotype analysis were applied. Results: The haplotypes from 46A/G and 79C/G SNP of ADRB2 were associated with HAPE. The MDR model depicting disease association through genotype–genotype and genotype–phenotype interaction included SNP 46A/G, 79C/G and 523C/A. Its haplotype 46G_79C_523C was significantly overrepresented in HAPE‐r ( P = 0.0001; χ 2 = 14.95; OR = 4.52; 95% CI: 1.98–10.3). The global haplotype test showed significant association with HAPE (LRχ 2 = 86.69, P < 0.0001). A moving‐window analysis revealed that haplotype –367C/T_46A/G_79C/G differed significantly between HAPE‐p and HAPE‐r (LRχ 2 = 22.5, P = 0.002). The MDR model depicted SNP 46A/G, 79C/G and 523C/A as the best combination predicting disease. Conclusions: The haplotypes of ADRB2 consisting of the SNP, 46A/G and 79C/G, have a greater power for predicting HAPE.