Open AccessDissection of the ribonuclease T 1 subsite
Author(s) -
STEYAERT Jan,
HAIKAL Abdel F.,
STANSSENS Patrick,
WYNS Lode
Publication year - 1992
Publication title -
european journal of biochemistry
Language(s) - English
Resource type - Journals
eISSN - 1432-1033
pISSN - 0014-2956
DOI - 10.1111/j.1432-1033.1992.tb16582.x
Subject(s) - chemistry , stereochemistry , nucleoside , cytidine , guanosine , moiety , transesterification , nucleotide , pancreatic ribonuclease , ribose , ribonuclease , enzyme kinetics , rnase p , cytosine , catalysis , active site , enzyme , biochemistry , rna , dna , gene
Ribonuclease T 1 contains a subsite which by interacting with the leaving nucleoside N of GpN dinucleoside phosphate substrates, contributes to catalysis [Steyaert, J., Wyns, L. & Stanssens, P. (1991) Biochemistry 30 , 8661–8665]. The Asn36Ala and Asn98Ala mutations reduce the transesterification rates of GpA, GpC and GpU considerably whereas they have virtually no effect on the transesterification kinetics of the synthetic substrate guanosine 3′‐(methyl phosphate) (GpMe) (in which the leaving nucleoside is replaced by methanol), indicating that the Asn36 and Asn98 side chains are part of the RNase T 1 subsite [Steyaert, J., Haikal, A. F., Wyns, L. & Stanssens, P. (1991) Biochemistry 30 , 8666–8670]. The kinetics of the Asn36Ala, Asn98Ala and wild‐type catalyzed transesterification of guanosine 3′‐(5′‐d‐ribosyl phosphate) (GpRib), another GpN analog in which the leaving groups is replaced by d‐ribose, enables the mapping of the subsite interactions provided by Asn36 and Asn98. We find that the Asn36 amide function contributes 4.6 kJ/mol to catalysis through interactions with the ribose moiety of the leaving nucleoside. Asn98 is at least in part responsible for the subsite preference for cytidine; the Asn98 side chain preferentially binds cytosine as the leaving nucleoside base.