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Inferring the genetic network of m‐ xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt‐2
Author(s) -
Velázquez Francisco,
Parro Víctor,
de Lorenzo Víctor
Publication year - 2005
Publication title -
molecular microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.857
H-Index - 247
eISSN - 1365-2958
pISSN - 0950-382X
DOI - 10.1111/j.1365-2958.2005.04787.x
Subject(s) - biology , pseudomonas putida , operon , gene , plasmid , genetics , gene expression , catabolism , regulator gene , regulation of gene expression , transcription (linguistics) , biochemistry , metabolism , linguistics , philosophy , escherichia coli
Summary A subgenomic array of structural and regulatory genes of the TOL plasmid pWW0 of Pseudomonas putida mt‐2 has been constructed to sort out the interplay between m‐ xylene catabolism and the environmental stress brought about by this aromatic chemical. To this end, xyl sequences were spotted along with groups of selected P. putida genes, the transcription of which become descriptors of distinct physiological conditions. The expression of the TOL pathway in response to pathway substrates was thus profiled, uncovering a regulatory network that overcomes and expands the predictions made by projecting known data from individual promoters. First, post‐transcriptional checks appear to mitigate the burden caused by non‐productive induction of the TOL operons. Second, the fate of different segments of the polycistronic mRNAs from the upper and lower TOL operons varies depending on the metabolism of their inducers. Finally, m‐ xylene triggers a noticeable heat shock, the onset of which does interfere with optimal expression of catabolic genes. These results reveal a degree of regulatory partnership between TOL plasmid‐encoded functions and host physiology that go beyond transcription initiation control.