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Revised and updated nomenclature for highly pathogenic avian influenza A (H5N1) viruses
Publication year - 2014
Publication title -
influenza and other respiratory viruses
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.743
H-Index - 57
eISSN - 1750-2659
pISSN - 1750-2640
DOI - 10.1111/irv.12230
Subject(s) - clade , influenza a virus subtype h5n1 , goose , highly pathogenic , nomenclature , hemagglutinin (influenza) , phylogenetic tree , biology , phylogenetic nomenclature , lineage (genetic) , evolutionary biology , zoology , geography , virology , genetics , gene , taxonomy (biology) , virus , ecology
The divergence of the hemagglutinin gene of A/goose/Guangdong/1/1996‐lineage H5N1 viruses during 2011 and 2012 (807 new sequences collected through December 31, 2012) was analyzed by phylogenetic and p‐distance methods to define new clades using the pre‐established nomenclature system. Eight new clade designations were recommended based on division of clade 1·1 (Mekong River Delta), 2·1·3·2 (Indonesia), 2·2·2 (India/Bangladesh), 2·2·1·1 (Egypt/Israel), and 2·3·2·1 (Asia). A simplification to the previously defined criteria, which adds a letter rather than number to the right‐most digit of fifth‐order clades, was proposed to facilitate this and future updates.

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