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Construction and validation of a detailed kinetic model of glycolysis in Plasmodium falciparum
Author(s) -
Penkler Gerald,
du Toit Francois,
Adams Waldo,
Rautenbach Marina,
Palm Daniel C.,
van Niekerk David D.,
Snoep Jacky L.
Publication year - 2015
Publication title -
the febs journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.981
H-Index - 204
eISSN - 1742-4658
pISSN - 1742-464X
DOI - 10.1111/febs.13237
Subject(s) - plasmodium falciparum , glycolysis , kinetic energy , chemistry , biological system , computational biology , biochemistry , biology , malaria , physics , enzyme , immunology , quantum mechanics
The enzymes in the Embden-Meyerhof-Parnas pathway of Plasmodium falciparum trophozoites were kinetically characterized and their integrated activities analyzed in a mathematical model. For validation of the model, we compared model predictions for steady-state fluxes and metabolite concentrations of the hexose phosphates with experimental values for intact parasites. The model, which is completely based on kinetic parameters that were measured for the individual enzymes, gives an accurate prediction of the steady-state fluxes and intermediate concentrations. This is the first detailed kinetic model for glucose metabolism in P. falciparum, one of the most prolific malaria-causing protozoa, and the high predictive power of the model makes it a strong tool for future drug target identification studies. The modelling workflow is transparent and reproducible, and completely documented in the SEEK platform, where all experimental data and model files are available for download.