Open AccessGenomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish
Author(s) -
Bradbury Ian R.,
Hubert Sophie,
Higgins Brent,
Bowman Sharen,
Borza Tudor,
Paterson Ian G.,
Snelgrove Paul V. R.,
Morris Corey J.,
Gregory Robert S.,
Hardie David,
Hutchings Jeffrey A.,
Ruzzante Daniel E.,
Taggart Christopher T.,
Bentzen Paul
Publication year - 2013
Publication title -
evolutionary applications
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.776
H-Index - 68
ISSN - 1752-4571
DOI - 10.1111/eva.12026
Subject(s) - biology , population genomics , local adaptation , evolutionary biology , genomics , population , nucleotide diversity , genetics , genome , single nucleotide polymorphism , haplotype , gene , genotype , demography , sociology
Abstract As populations diverge, genomic regions associated with adaptation display elevated differentiation. These genomic islands of adaptive divergence can inform conservation efforts in exploited species, by refining the delineation of management units, and providing genomic tools for more precise and effective population monitoring and the successful assignment of individuals and products. We explored heterogeneity in genomic divergence and its impact on the resolution of spatial population structure in exploited populations of A tlantic cod, G adus morhua , using genome wide expressed sequence derived single nucleotide polymorphisms in 466 individuals sampled across the range. Outlier tests identified elevated divergence at 5.2% of SNP s, consistent with directional selection in one‐third of linkage groups. Genomic regions of elevated divergence ranged in size from a single position to several c M . Structuring at neutral loci was associated with geographic features, whereas outlier SNP s revealed genetic discontinuities in both the eastern and western A tlantic. This fine‐scale geographic differentiation enhanced assignment to region of origin, and through the identification of adaptive diversity, fundamentally changes how these populations should be conserved. This work demonstrates the utility of genome scans for adaptive divergence in the delineation of stock structure, the traceability of individuals and products, and ultimately a role for population genomics in fisheries conservation.