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Value of whole exome sequencing for syndromic retinal dystrophy diagnosis in young patients
Author(s) -
Prokudin Ivan,
Li Dong,
He Sijie,
Guo Yiran,
Goodwin Linda,
Wilson Meredith,
Rose Loreto,
Tian Lifeng,
Chen Yulan,
Liang Jinlong,
Keating Brendan,
Xu Xun,
Jamieson Robyn V,
Hakonarson Hakon
Publication year - 2015
Publication title -
clinical and experimental ophthalmology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.3
H-Index - 74
eISSN - 1442-9071
pISSN - 1442-6404
DOI - 10.1111/ceo.12391
Subject(s) - medicine , exome sequencing , microcephaly , exome , genetics , disease , pediatrics , bioinformatics , pathology , mutation , gene , biology
Background Several retinal dystrophies are associated with syndromic features including such conditions as B ardet– B iedl and J oubert syndromes. C ohen syndrome is an autosomal recessive disorder associated with multiple clinical manifestations including developmental delay, acquired microcephaly, myopia, pigmentary retinopathy, joint hypermobility, truncal obesity, friendly disposition and intermittent neutropenia. In young patients, diagnosis is difficult, because several of the characteristic features may not be present until school age or later years and the intermittent neutropenia is not always detectable. Design This was a prospective study using whole exome sequencing in syndromic retinal dystrophy. It was undertaken in a hospital and research institute setting. Participants Participants in this study were members of a consanguineous Australian family of L ebanese ethnicity with two siblings with retinal dystrophy, microcephaly and developmental delay. Methods Detailed clinical evaluation was undertaken. Whole exome capture and sequencing of patient genomic DNA samples was followed by sequence alignment, variant detection, comparison and prioritization. Main Outcome Measures Pathogenic variant identification in the disease‐causing gene in affected individuals. Results We identified a novel homozygous deletion leading to a frameshift mutation in VPS 13 B , c.11327del, p.( Asn 3776 Thrfs *102), the disease gene associated with C ohen syndrome. Conclusions This report emphasizes the value of a broad‐based whole exome sequencing approach in disease gene identification in the syndromic retinal dystrophies, where all disease characteristics may not be present in young patients to allow a clinical diagnosis. This facilitates improved prognostic and genetic information for patients and families.