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Effects of florfenicol feeding on diversity and composition of the intestinal microbiota of channel catfish ( Ictalurus punctatus )
Author(s) -
Abdelhamed Hossam,
Ozdemir Ozan,
Waldbieser Geoffrey,
Perkins Andy D.,
Lawrence Mark L.,
Karsi Attila
Publication year - 2019
Publication title -
aquaculture research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.646
H-Index - 89
eISSN - 1365-2109
pISSN - 1355-557X
DOI - 10.1111/are.14325
Subject(s) - florfenicol , biology , catfish , firmicutes , ictalurus , lactococcus , microbiology and biotechnology , population , bacteroidetes , proteobacteria , gut flora , antibiotics , 16s ribosomal rna , bacteria , fishery , biochemistry , genetics , lactic acid , lactococcus lactis , demography , sociology , fish <actinopterygii>
Intestinal microbiota contributes health of living organisms. Florfenicol is an approved antimicrobial (AM) prescribed for several bacterial fish diseases. The present study investigated the extent to which florfenicol modulates intestinal microbial populations of channel catfish ( Ictalurus punctatus ). Florfenicol was administered orally to catfish at a standard therapeutic dose (10–15 mg/kg of body weight for 10 days), and the intestinal contents were collected and the 16S rRNA was subjected to Illumina sequencing. Alpha diversity analysis indicated that florfenicol significantly decreased microbiota richness and diversity. Beta diversity reflected a clear separation had occurred between the florfenicol‐fed and control groups. Results indicated a significant increase in the abundance of phylum Proteobacteria (98.97% vs. 79.35% of the population) and decrease in phyla Firmicutes and Bacteroidetes (0.72% and 0.29% vs. 18.04% and 2.53%, respectively) in the florfenicol‐fed fish in comparison with the control fish. At the genus level, unclassified Enterobacteriaceae and Escherichia populations increased in the florfenicol group. In contrast, Plesiomonas, Aeromonas, Lactococcus, Clostridium sensu stricto, Romboutsia, Klebsiella, Turicibacter and Lactobacillus decreased in florfenicol‐fed fish in comparison with the control fish, indicating that intestinal microbiota of catfish was substantially modulated by florfenicol administration. Knowledge of changes in gut microbiota during medicated feed administration is important to improve fish performance and disease management and could enable the development of alternative therapeutic strategies.