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Identification of a large dataset of SNPs in hair‐fin anchovy ( Setipinna tenuifilis ) based on RAD‐seq
Author(s) -
Peng Y.,
Li J. S.,
Zhang K.,
Liu Y. F.,
Li X. P.,
Zhang H.,
Gong L.,
Liu L. Q.,
Lü Z. M.,
Liu B. J.
Publication year - 2021
Publication title -
animal genetics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.756
H-Index - 81
eISSN - 1365-2052
pISSN - 0268-9146
DOI - 10.1111/age.13062
Subject(s) - biology , anchovy , single nucleotide polymorphism , snp , genetic diversity , identification (biology) , evolutionary biology , dna sequencing , fishery , genetics , fish <actinopterygii> , computational biology , ecology , genotype , gene , population , demography , sociology
Summary Hair‐fin anchovy ( Setipinna tenuifilis ) is an economically important fish distributed in the West Indian Ocean and the Northwest Pacific Ocean. In this study, 154 individuals in eight populations of S. tenuifilis were sequenced and 850 million raw reads were obtained using restriction site‐associated DNA sequencing (RAD‐seq). First, we identified 14 012 044 hypothetical SNP markers. A dataset of 199 903 high‐quality SNPs was collected after further screening. These SNPs have a strong ability to test the genetic diversity between the eight populations. The differentiation and genetic law between samples were explored based on SNPs in populations of S. tenuifilis . The results of this study will provide data for protecting the genetic resources of the species.