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Genome‐wide association studies of the self‐rating of effects of ethanol (SRE)
Author(s) -
Lai Dongbing,
Wetherill Leah,
Kapoor Manav,
Johnson Emma C.,
Schwandt Melanie,
Ramchandani Vijay A.,
Goldman David,
Joslyn Geoff,
Rao Xi,
Liu Yunlong,
Farris Sean,
Mayfield R. Dayne,
Dick Danielle,
Hesselbrock Victor,
Kramer John,
McCutcheon Vivia V.,
Nurnberger John,
Tischfield Jay,
Goate Alison,
Edenberg Howard J.,
Porjesz Bernice,
Agrawal Arpana,
Foroud Tatiana,
Schuckit Marc
Publication year - 2020
Publication title -
addiction biology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.445
H-Index - 78
eISSN - 1369-1600
pISSN - 1355-6215
DOI - 10.1111/adb.12800
Subject(s) - alcohol dependence , genome wide association study , alcohol , locus (genetics) , genetics , alcohol abuse , medicine , biology , gene , genotype , psychiatry , single nucleotide polymorphism , biochemistry
The level of response (LR) to alcohol as measured with the Self‐Report of the Effects of Alcohol Retrospective Questionnaire (SRE) evaluates the number of standard drinks usually required for up to four effects. The need for a higher number of drinks for effects is genetically influenced and predicts higher risks for heavy drinking and alcohol problems. We conducted genome‐wide association study (GWAS) in the African‐American (COGA‐AA, N = 1527 from 309 families) and European‐American (COGA‐EA, N = 4723 from 956 families) subsamples of the Collaborative Studies on the Genetics of Alcoholism (COGA) for two SRE scores: SRE‐T (average of first five times of drinking, the period of heaviest drinking, and the most recent 3 months of consumption) and SRE‐5 (the first five times of drinking). We then meta‐analyzed the two COGA subsamples (COGA‐AA + EA). Both SRE‐T and SRE‐5 were modestly heritable ( h 2 : 21%‐31%) and genetically correlated with alcohol dependence (AD) and DSM‐IV AD criterion count ( r g : 0.35‐0.76). Genome‐wide significant associations were observed (SRE‐T: chromosomes 6, rs140154945, COGA‐EA P = 3.30E‐08 and 11, rs10647170, COGA‐AA+EA P = 3.53E‐09; SRE‐5: chromosome13, rs4770359, COGA‐AA P = 2.92E‐08). Chromosome 11 was replicated in an EA dataset from the National Institute on Alcohol Abuse and Alcoholism intramural program. In silico functional analyses and RNA expression analyses suggest that the chromosome 6 locus is an eQTL for KIF25 . Polygenic risk scores derived using the COGA SRE‐T and SRE‐5 GWAS predicted 0.47% to 2.48% of variances in AD and DSM‐IV AD criterion count in independent datasets. This study highlights the genetic contribution of alcohol response phenotypes to the etiology of alcohol use disorders.