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popart : full‐feature software for haplotype network construction
Author(s) -
Leigh Jessica W.,
Bryant David
Publication year - 2015
Publication title -
methods in ecology and evolution
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.425
H-Index - 105
ISSN - 2041-210X
DOI - 10.1111/2041-210x.12410
Subject(s) - haplotype , software , computer science , visualization , r package , feature (linguistics) , population , data mining , biology , operating system , genotype , programming language , biochemistry , linguistics , philosophy , demography , sociology , gene
SummaryHaplotype networks are an intuitive method for visualising relationships between individual genotypes at the population level. Here, we present popart , an integrated software package that provides a comprehensive implementation of haplotype network methods, phylogeographic visualisation tools and standard statistical tests, together with publication‐ready figure production.popart also provides a platform for the implementation and distribution of new network‐based methods – we describe one such new method, integer neighbour‐joining . The software is open source and freely available for all major operating systems.