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Association between vitamin D receptor gene polymorphism and ankylosing spondylitis in Han Chinese
Author(s) -
Zhang Pingping,
Li Qiuxia,
Qi Jun,
Lv Qing,
Zheng Xuqi,
Wu Xinyu,
Gu Jieruo
Publication year - 2017
Publication title -
international journal of rheumatic diseases
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.795
H-Index - 41
eISSN - 1756-185X
pISSN - 1756-1841
DOI - 10.1111/1756-185x.12949
Subject(s) - calcitriol receptor , foki , single nucleotide polymorphism , taqi , haplotype , genotyping , genetics , medicine , allele , polymorphism (computer science) , genotype , gene , biology
Objectives To investigate whether vitamin D receptor ( VDR ) gene polymorphisms confer susceptibility to aankylosing spondylitis ( AS ) and study its polymorphisms in Han Chinese. Methods We screened single nucleotide polymorphisms ( SNP s) in the VDR region through genome‐wide genotyping chips in AS cases and healthy controls, then used the exome sequencing result to analyze all the potential AS ‐associated SNP s in the VDR gene. Results Thirty‐two SNP s were found in the VDR gene in the genome‐wide genotyping chips and the logistic regression result showed no significant difference between AS cases and controls. A total of 46 SNP s in the VDR region were genotyped through exome sequencing, including four functional SNP s (rs731236 [TaqI], rs2228570 [FokI], rs7975232 [ApaI], rs1544410 [BsmI]) and two newly discovered SNP s (12:48259222 and 12:48276730). To note, rs731236 and rs2228570 locate in the exons of VDR , which cause synonymous and missense mutation. The association test showed there was no significant difference between AS cases and controls in the allele frequency distribution, but haplotype analysis of rs11168266‐rs11168267 show nominal significance ( P = 0.01268). Conclusion Our preliminary study indicates the haplotypes ( TG ) of rs11168266‐rs11168267 in the VDR gene confers susceptibility to AS , which is worth further research.