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The PRIDE server for protein three‐dimensional similarity
Author(s) -
Vlahovicek Kristian,
Carugo Oliviero,
Pongor Sándor
Publication year - 2002
Publication title -
journal of applied crystallography
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.429
H-Index - 162
ISSN - 1600-5767
DOI - 10.1107/s002188980201292x
Subject(s) - protein data bank (rcsb pdb) , similarity (geometry) , protein data bank , computer science , cluster analysis , distance matrix , pairwise comparison , dendrogram , data mining , protein structure , algorithm , artificial intelligence , biology , genetic diversity , image (mathematics) , population , biochemistry , demography , sociology
The PRIDE server is an implementation of the PRIDE algorithm that compares protein three‐dimensional structures in terms of their C α distance distributions. In response to queries presented as single or concatenated Protein Data Bank (PDB) files, the server can carry out (i) a pairwise comparison of two protein three‐dimensional structures, (ii) a structural clustering of protein three‐dimensional structures, providing a distance matrix and a dendrogram as an output; and (iii) a similarity search with a protein domain structure query against the CATH database.