Different Gene Families inArabidopsis thalianaTransposed in Different Epochs and at Different Frequencies throughout the Rosids
Author(s) -
Margaret Woodhouse,
Haibao Tang,
Michael Freeling
Publication year - 2011
Publication title -
the plant cell
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 5.324
H-Index - 341
eISSN - 1532-298X
pISSN - 1040-4651
DOI - 10.1105/tpc.111.093567
Subject(s) - biology , synteny , gene duplication , genetics , gene , arabidopsis thaliana , gene family , genome , tandem exon duplication , segmental duplication , arabidopsis , transposition (logic) , mutant , linguistics , philosophy
Certain types of gene families, such as those encoding most families of transcription factors, maintain their chromosomal syntenic positions throughout angiosperm evolutionary time. Other nonsyntenic gene families are prone to deletion, tandem duplication, and transposition. Here, we describe the chromosomal positional history of all genes in Arabidopsis thaliana throughout the rosid superorder. We introduce a public database where researchers can look up the positional history of their favorite A. thaliana gene or gene family. Finally, we show that specific gene families transposed at specific points in evolutionary time, particularly after whole-genome duplication events in the Brassicales, and suggest that genes in mobile gene families are under different selection pressure than syntenic genes.
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