Open AccessPseudomonas capsici sp. nov., a plant-pathogenic bacterium isolated from pepper leaf in Georgia, USA
Author(s) -
Mei Zhao,
Santosh Koirala,
Hsiao-Chun Chen,
R. D. Gitaitis,
Brian H. Kvitko,
Bhabesh Dutta
Publication year - 2021
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.004971
Subject(s) - biology , pepper , 16s ribosomal rna , pseudomonas , botany , strain (injury) , pseudomonas syringae , bacteria , microbiology and biotechnology , horticulture , genetics , anatomy
Three phytopathogenic bacterial strains (Pc19-1 T , Pc19-2 and Pc19-3) were isolated from seedlings displaying water-soaked, dark brown-to-black, necrotic lesions on pepper ( Capsicum annuum ) leaves in Georgia, USA. Upon isolation on King's medium B, light cream-coloured colonies were observed and a diffusible fluorescent pigment was visible under ultraviolet light. Analysis of their 16S rRNA gene sequences showed that they belonged to the genus Pseudomonas , with the highest similarity to Pseudomonas cichorii ATCC 10857 T (99.7 %). The fatty acid analysis revealed that the majority of the fatty acids were summed feature 3 (C 16 : 1 ω7 c /C 16 : 1 ω6 c ), C 16 : 0 and summed feature 8 (C 18 : 1 ω7 c /C 18 : 1 ω6 c ). Phylogenomic analyses based on whole genome sequences demonstrated that the pepper strains belonged to the Pseudomonas syringae complex with P. cichorii as their closest neighbour, and formed a separate monophyletic clade from other species. Between the pepper strains and P. cichorii , the average nucleotide identity values were 91.3 %. Furthermore, the digital DNA-DNA hybridization values of the pepper strains when compared to their closest relatives, including P. cichorii , were 45.2 % or less. In addition, biochemical and physiological features were examined in this study and the results indicate that the pepper strains represent a novel Pseudomonas species. Therefore, we propose a new species Pseudomonas capsici sp. nov., with Pc19-1 T (=CFBP 8884 T =LMG 32209 T ) as the type strain. The DNA G+C content of the strain Pc19-1 T is 58.4 mol%.