Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil
Author(s) -
Dimitry Y. Sorokin,
Tatjana V. Khijniak,
Alisa Zakharycheva,
Alexander G. Elcheninov,
Richard L. Hahnke,
Olga V. Boueva,
Е. В. Арискина,
Boyke Bunk,
Ilya V. Kublanov,
Lyudmila I. Evtushenko
Publication year - 2021
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.004804
Subject(s) - biology , muramic acid , diaminopimelic acid , peptidoglycan , biochemistry , diamino acid , arabinose , xylose , phosphatidylinositol , 16s ribosomal rna , alanine , strain (injury) , cell wall , amino acid , botany , gene , fermentation , kinase , anatomy , gene sequence
A haloalkaliphilic hydrolytic actinobacterium, strain ACPA22 T , was enriched and isolated in pure culture from saline alkaline soil (soda solonchak) in northeastern Mongolia. The isolate was facultatively alkaliphilic, growing at pH 6.5-10.5 (optimum at 7.3-9.0) and highly salt-tolerant, tolerating up to 3 M total Na + as carbonates. The hydrolytic nature of ACPA22 T was confirmed by two different growth-dependent methods and by the presence of multiple glycosidase-encoding genes in the genome. The 16S rRNA gene-based phylogenetic analysis demonstrated that strain ACPA22 T formed a deep-branching lineage within the family Glycomycetaceae, with the highest sequence similarity value to Glycomyces buryatensis 18 T (92.1 %) and Salininema proteolyticum Miq-4 T (91.8 %). The average amino acid identity values (56.1-61.5 %) between ACPA22 T and other Glycomycetaceae members with available genomes did not exceed the threshold reported for different genera. The cell wall of ACPA22 T contained meso -diaminopimelic acid, glycine, glutamic acid and alanine in a molar ratio, characteristic of the peptidoglycan type A1γ'. The whole-cell sugars included mannose, galactose, arabinose, ribose and xylose. The major menaquinones were MK-10(Н 4 ) and MK-11(Н 4 ). The identified polar lipids were represented by phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannosides. In addition, the strain had a few unidentified characteristic polar lipids, including an amine-containing phospholipid with chromatographic mobility similar to that of phosphatidylinositol. The polar lipid fatty acids were dominated by anteiso-C 17 : 0 and iso-C 16 : 0 . The genome included a chromosome of 3.94 Mbp (G+C content 61.5 mol%) encoding 3285 proteins and two plasmids of 59.8 and 14.8 kBp. Based on the data obtained in this study, a new genus and species, Natronoglycomyces albus gen. nov., sp. nov, is proposed with the type strain ACPA22 T (=DSM 106290 T =VKM Ac-2771 T ).
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