Open AccessPareuzebyella sediminis gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae, isolated from a tidal flat sediment
Author(s) -
Zhongdong Huang,
Xiaomei Wei,
Qiliang Lai,
Shiyong Chen,
Jianjun Yuan
Publication year - 2021
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.004606
Subject(s) - biology , 16s ribosomal rna , phylogenetic tree , flavobacteriaceae , monophyly , strain (injury) , phylogenetics , clade , thermophile , botany , microbiology and biotechnology , bacteria , gene , genetics , anatomy
Two marine bacterial strains, designated S2-4-21 T and MT2-5-19, were isolated from two tidal flat sediments of cordgrass Spartina alterniflora and adjacent oyster culture field in Quanzhou bay, China, respectively. Both strains were Gram-staining-negative, rod-shaped, non-flagellated, non-motile, aerobic, had NaCl requirements, and contained carotenoid and flexirubin pigments. The 16S rRNA gene sequence similarity (99.8%), average nucleotide identity value (99.4%) and average amino acid identity (99.3%) between strain S2-4-21 T and strain MT2-5-19 strongly supported that they belonged to a single species. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain S2-4-21 T and strain MT2-5-19 formed a monophyletic branch affiliated to the family Flavobacteriaceae , sharing similarities of 94.6% with Euzebyella marina CY01 T and E. saccharophila 7SM30 T , and of 94.1 and 92.8% with E. algicola MEBiC 12267 T and Pseudozobellia thermophile DSM 19858 T , respectively. Phylogenomic analysis based on the whole genome sequences supported that the two strains formed a distinct monophyletic clade within Flavobacteriaceae members, which was phylogenetically different from the clades of Euzebyella and Pseudozobellia . The major respiratory quinone was menaquinone MK-6. The major fatty acids (>10%) consisted of C 15 : 0 iso, C 16 : 0 , summed feature 9 (C 17 : 1 iso ω 9 c /C 16 : 0 10-methyl) and C 17 : 0 iso 3-OH. The polar lipid profiles of strain S2-4-21 T and strain MT2-5-19 are identical, including phosphatidylethanolamine, four unidentified aminolipids, and four unidentified lipids. The genomic size was 4.9–5.0 Mb with genomic DNA G+C content of 41.5 mol%. Based on the above characteristics, strains S2-4-21 T and MT2-5-19 represented a novel species of a novel genus in the family Flavobacteriaceae . Thus, Pareuzebyella sediminis gen. nov. sp. nov. is proposed with type strain S2-4-21 T (=MCCC 1K03818 T =KCTC 72152 T ), and another strain MT2-5-19 (=KCTC 72539=MCCC 1K03874).