z-logo
open-access-imgOpen Access
Spirosoma endbachense sp. nov., isolated from a natural salt meadow
Author(s) -
Julian Rojas,
Binoy Ambika Manirajan,
Stefan Ratering,
Christian Suarez,
Rita Geißler-Plaum,
Sylvia Schnell
Publication year - 2020
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.004601
Subject(s) - biology , 16s ribosomal rna , strain (injury) , genomic dna , oxidase test , bacteria , botany , bacteroidetes , gene , phylogenetic tree , biochemistry , genetics , enzyme , anatomy
A Gram-stain-negative bacterium, designated I-24 T , was isolated from soil of a natural salt meadow. Strain I-24 T was aerobic, non-motile, rod-shaped, catalase-positive, oxidase-positive and grew optimally at pH 7 and 25 °C. Comparative 16S rRNA gene analysis indicated that strain I-24 T has closest similarities to Spirosoma agri KCTC 52727 T (95.9 %) and Spirosoma terrae KCTC 52035 T (95.5 %). Strain I-24 T contained summed feature 3 (C 16 : 1  ω 7 c /C 16 : 1  ω 6 c ) and C 16 : 1  ω 5 c as the major fatty acids, the predominant respiratory quinone was menaquinone MK-7, and the major polar lipids were phosphatidylethanolamine as well as an unidentified phosphoaminolipid. The draft genome of strain I-24 T consists of 10 326 072 base pairs with 9153 predicted coding sequences and a G+C content of 47.7 mol%. Clear distinctions between strain I-24 T and S. agri KCTC 52727 T or S. terrae KCTC 52035 T were shown in the pairwise average nucleotide identity results with values of 76.71 and 74.01 %, respectively. Moreover, the digital DNA–DNA relatedness values to these strains were 20.8 and 19.0 %. Based on its phenotypic, genotypic and chemotaxonomic characteristics, strain I-24 T represents a novel species of the genus Spirosoma , for which the name Spirosoma endbachense sp. nov. is proposed. The type strain is I-24 T (DSM 111055 T =KCTC 72613 T ).

The content you want is available to Zendy users.

Already have an account? Click here to sign in.
Having issues? You can contact us here
Accelerating Research

Address

John Eccles House
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom