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Novosphingobium ovatum sp. nov., isolated from a freshwater mesocosm
Author(s) -
Wen-Ming Chen,
Cheng-Ye Cai,
Der-Shyan Sheu,
Jyh-Ming Tsai,
Shih-Yi Sheu
Publication year - 2020
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.004402
Subject(s) - biology , 16s ribosomal rna , phylogenetic tree , microbiology and biotechnology , spermidine , strain (injury) , bacteria , gene , biochemistry , genetics , enzyme , anatomy
A bacterial strain, designated FSY-8 T , was isolated from a freshwater mesocosm in Taiwan and characterized using the polyphasic taxonomy approach. Cells of strain FSY-8 T were aerobic, Gram-stain-negative, rod-shaped, non-motile and formed yellow coloured colonies on Reasoner's 2A agar. Growth occurred at 20–40 °C (optimum, 30–37 °C) and pH 5–7 (optimum, pH 6) and in the presence of 0–0.5 % NaCl (optimum, 0 %, w/v). The major fatty acids (>10 %) of strain FSY-8 T were summed feature 8 (C 18 : 1  ω 7 c and/or C 18 : 1  ω 6 c ) and summed feature 3 (C 16 : 1  ω 7 c and/or C 16 : 1  ω 6 c ). The polar lipid profile consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, phosphatidylmonomethylethanolamine, phosphatidyldimethylethanolamine, sphingoglycolipid, diphosphatidylglycerol, an uncharacterized aminophospholipid, an uncharacterized glycolipid and an uncharacterized lipid. The major polyamine was spermidine. The major isoprenoid quinone was Q-10. The DNA G+C content was 64.8 mol %. Phylogenetic analyses based on 16S rRNA gene sequences and coding sequences of 92 protein clusters indicated that strain FSY-8 T formed a phylogenetic lineage in the genus Novosphingobium . Strain FSY-8 T showed 71.6–77.2 % average nucleotide identity and 19.9–22.8 % digital DNA–DNA hybridization identity with the strains of other Novosphingobium species. On the basis of phenotypic and genotypic properties and phylogenetic inference, strain FSY-8 T should be classified in a novel species of the genus Novosphingobium , for which the name Novosphingobium ovatum sp. nov. is proposed. The type strain is FSY-8 T (=BCRC 81051 T =LMG 30053 T =KCTC 52812 T ).

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