
Cohnella fermenti sp. nov., isolated from a fermentation process
Author(s) -
Shih-Yao Lin,
Wen-Ming Chen,
Asif Hameed,
Guan-Hua Huang,
Mei-Hua Hung,
Chiu-Chung Young
Publication year - 2020
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.004080
Subject(s) - biology , 16s ribosomal rna , phylogenetic tree , genomic dna , strain (injury) , microbiology and biotechnology , genome size , bacteria , spermidine , gene , genetics , genome , biochemistry , anatomy , enzyme
A novel Gram-stain-positive, aerobic, motile with peritrichous flagella, rod-shaped bacterium, designated CC-MHH1044 T , was isolated from a preserved vegetable sample. A polyphasic taxonomic approach was applied to the isolates in order to clarify its taxonomic position. Growth of the strain CC-MHH1044 T occurred at 15–50 °C (optimum, 30 °C), pH 6.0–8.0 (optimum, pH 7.0) and with 0–2.0 % (w/v) NaCl (optimum, 1 %, w/v). The genome of strain CC-MHH1044 T consisted of 8.5 Mb and the genomic DNA G+C content was 58.5 mol%. Comparison of the 16S rRNA gene sequences showed that CC-MHH1044 T belonged to the genus Cohnella and showed a close relationship with the type strains of Cohnella damuensis (96.2 %) and Cohnella panacarvi (95.9 %), and lower sequence similarity to other species. Average nucleotide identity values calculated from whole-genome sequencing data proved that CC-MHH1044 T represents a distinct Cohnella species. The dominant cellular fatty acids (>5 %) included iso-C 14 : 0 (7.4 %), iso-C 15 : 0 (6.4 %), anteiso-C 15 : 0 (40.3 %), C 16 : 0 (6.6 %) and iso-C 16 : 0 (27.0 %). The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, four unidentified aminophospholipids, one unidentified phospholipid and glycolipid. The major polyamine was spermidine. The predominant isoprenoid quinone was menaqinone 7 (MK-7). Based on its distinct phylogenetic, phenotypic and chemotaxonomic traits, together with results of comparative 16S rRNA gene sequence, average nucleotide identity and digital DNA–DNA hybridization analyses, we conclude that strain CC-MHH1044 T represents a novel member of the genus Cohnella , for which the name Cohnella fermenti sp. nov. is proposed. The type strain is CC-MHH1044 T (=BCRC 81147 T =JCM 32834 T ).