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Ktedonosporobacter rubrisoli gen. nov., sp. nov., a novel representative of the class Ktedonobacteria, isolated from red soil, and proposal of Ktedonosporobacteraceae fam. nov.
Author(s) -
Bingfa Yan,
Xiaoxuan Guo,
Minghao Liu,
Ying Huang
Publication year - 2019
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.003864
Subject(s) - biology , 16s ribosomal rna , peptidoglycan , strain (injury) , phylogenetic tree , rhamnose , diamino acid , ribosomal rna , genome , phylogenetics , bacteria , gene , microbiology and biotechnology , genetics , galactose , biochemistry , anatomy , gene sequence
A novel filamentous, spore-forming, Gram-stain-positive bacterium, designated SCAWS-G2 T , was isolated from red soil in Jiangxi Province, PR China. The strain grew at 25–45 °C and at pH 4.0–7.0, and was able to tolerate up to 50 mM Zn 2+ . The complete genome of strain SCAWS-G2 T was a circular chromosome of ~11.34 Mb, which contained four 16S rRNA genes with three sequence types (0.4–0.8 % differences). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain SCAWS-G2 T formed a distinct lineage within the order Ktedonobacterales , showing <89.2 % sequence similarities to the recognized taxa of this order. The whole-genome based phylogenomic tree separated strain SCAWS-G2 T from the recognized families within Ktedonobacterales . The genome-wide average nucleotide identity values between strain SCAWS-G2 T and the related type strains were <68.2 %. The strain can also be differentiated from the recognized families by a number of phenotypic characteristics. The polar lipids of SCAWS-G2 T were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, seven unidentified glycolipids and one unidentified lipid. The peptidoglycan amino acids contained ornithine, glycine, glutamic acid and alanine, and the cell-wall sugars were mainly galactose and rhamnose. The major fatty acids were C 16 : 1 2-OH, C 16 : 0 and iso-C 17 : 0 . Based on all these data, we propose that strain SCAWS-G2 T represents a novel genus and species, Ktedonosporobacter rubrisoli gen. nov., sp. nov., within the new family Ktedonosporobacteraceae fam. nov. of the order Ktedonobacterales . The type strain of Ktedonosporobacter rubrisoli is SCAWS-G2 T (=CGMCC 1.16132 T =DSM 105258 T ).

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