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Photobacterium salinisoli sp. nov., isolated from a sulfonylurea herbicide-degrading consortium enriched with saline soil
Author(s) -
Miaomiao Li,
Delong Kong,
Yani Wang,
QingYun Ma,
Xiaoyan Han,
Yiqing Zhou,
Jianping Xu,
Yuqin Zhang,
Zhiyong Ruan,
Qinghua Zhang
Publication year - 2019
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.003705
Subject(s) - biology , 16s ribosomal rna , phylogenetic tree , microbiology and biotechnology , strain (injury) , ribosomal rna , lineage (genetic) , bacteria , gene , genetics , anatomy
A Gram-stain-negative, aerobic, motile, rod-shaped bacterium, designated strain LAM9072 T , was isolated from a sample of a sulfonylurea herbicide-degrading consortium enriched with saline soil. The optimal temperature and pH for the growth of strain LAM9072 T were 35 °C and 7.0, respectively. Strain LAM9072 T could grow in the presence of NaCl up to 9 % (w/v). Comparative analysis of the 16S rRNA gene sequences revealed that strain LAM9072 T was closely related to members of the family Vibrionaceae , with the highest similarities to Photobacterium halotolerans MACL01 T (97.7 %) and Photobacterium galatheae S2753 T (97.7 %). Strain LAM9072 T formed a distinct phylogenetic subclade within the genus Photobacterium in the 16S rRNA gene phylogenetic trees. The results of multi-locus sequence analysis revealed a distinct lineage with P. halotolerans MACL01 T as its closest relative. The genomic G+C content was 50.2 mol%. The DNA-DNA hybridization values between strain LAM9072 T and P. halotolerans LMG 22194 T and P. galatheae LMG 28894 T were 41.6 and 22.2 %, respectively. The average nucleotide identity values were 90.9 and 78.8 %, respectively, by comparing the draft genome sequences of strain LAM9072 T and P. halotolerans LMG 22194 T and P. galatheae LMG 28894 T . The major fatty acids were summed feature 3 (C 16 : 1 ω6 c and/or C 16 : 1 ω7 c ), C 16 : 0 and summed feature 8 (C 18 : 1 ω7 c and/or C 18 : 1 ω6 c ). Ubiquinone 8 was detected as the predominant respiratory quinone. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, aminophospholipid and four unidentified lipids. Based on its phenotypic characteristics and the results of genotypic analyses, we propose that strain LAM9072 T represents a novel species, for which the name Photobacteriumsalinisoli sp. nov. is proposed. The type strain is LAM9072 T (=ACCC 19961 T =JCM 30852 T ).

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