Open AccessFlavobacterium amnicola sp. nov., isolated from a sub-tropical stream
Author(s) -
Shih-Yi Sheu,
Yaping Guo,
Wen-Ming Chen
Publication year - 2019
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.003463
Subject(s) - biology , 16s ribosomal rna , flavobacterium , phylogenetic tree , strain (injury) , microbiology and biotechnology , bacteroidetes , phylogenetics , bacteria , botany , gene , genetics , pseudomonas , anatomy
Strain LLJ-11 T , isolated from water sampled from a freshwater stream in Taiwan, was characterized using a polyphasic taxonomy approach. Cells of strain LLJ-11 T were Gram-stain-negative, strictly aerobic, motile by gliding, rod-shaped and formed translucent yellow colonies. Optimal growth occurred at 25 °C, pH 7 and 0 % NaCl. Phylogenetic analyses based on 16S rRNA gene sequences and coding sequences of 92 protein clusters indicated that strain LLJ-11 T is affiliated with species in the genus Flavobacterium. Strain LLJ-11 T was most closely related to Flavobacterium amniphilum KYPY10 T with 98.0 % 16S rRNA gene sequence identity. The DNA-DNA relatedness of strain LLJ-11 T with respect to Flavobacterium species was less than 35 %. Average nucleotide identity and digital DNA-DNA hybridization values between strain LLJ-11 T and the type strains of other closely related Flavobacterium species were 70.0-76.3 % and 21.1-23.9 %, respectively. Strain LLJ-11 T contained iso-C15 : 0, iso-C15 : 1 G, iso-C17 : 0 3-OH, iso-C15 : 0 3-OH, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and summed feature 9 (iso-C17 : 1ω9c and/or 10-methyl C16 : 0) as the predominant fatty acids. The major isoprenoid quinone was MK-6. The polar lipid profile consisted of phosphatidylethanolamine, three uncharacterized aminophospholipids and two uncharacterized phospholipids. The major polyamine was homospermidine. The DNA G+C content was 34.8 mol%. On the basis of the phylogenetic inference and phenotypic data, strain LLJ-11 T is considered a representative of a novel species within the genus Flavobacterium. The name Flavobacterium amnicola sp. nov. is proposed, with strain LLJ-11 T (=BCRC 81124 T =LMG 30599 T =KCTC 62514 T ) as the type strain.