Open AccessSphingomonas crocodyli sp. nov., isolated from a crocodile pond
Author(s) -
Shih-Yi Sheu,
Yi-Ru Xie,
Soon-Wo Kwon,
Ceshing Sheu,
Wen-Ming Chen
Publication year - 2019
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.003455
Subject(s) - biology , sphingomonas , 16s ribosomal rna , phylogenetic tree , microbiology and biotechnology , strain (injury) , phylogenetics , genetics , genomic dna , gene , botany , anatomy
Strain CCP-7 T , isolated from a freshwater pond in Taiwan, was characterized using a polyphasic taxonomy approach. Phylogenetic analyses based on 16S rRNA gene sequences and coding sequences of 92 protein clusters indicated that strain CCP-7 T formed a phylogenetic lineage in the genus Sphingomonas. Strain CCP-7 T was most closely related to Sphingomonas starnbergensis 382 T and Sphingomonas naphthae DKC-5-1 T with 96.2 % 16S rRNA gene sequence similarity. Strain CCP-7 T showed 65.5-76.7 % average nucleotide identity and 20.2-22.5 % digital DNA-DNA hybridization identity with the strains of other related Sphingomonas species. Cells were Gram-stain-negative, aerobic, motile, rod-shaped and formed light orange-coloured colonies. Optimal growth occurred at 30 °C, pH 6 and in the absence of NaCl. The major fatty acid of strain CCP-7 T was C18 : 1ω7c. The polar lipid profile consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylmonomethylethanolamine, three uncharacterized sphingoglycolipids, two uncharacterized phospholipids and six uncharacterized lipids. The predominant polyamine was homospermidine. The only isoprenoid quinone was Q-10. Genomic DNA G+C content of strain CCP-7 T was 64.5 %. On the basis of phenotypic and genotypic properties and phylogenetic inference, strain CCP-7 T should be classified in a novel species of the genus Sphingomonas, for which the name Sphingomonas crocodyli sp. nov. is proposed. The type strain is CCP-7 T (=BCRC 81096 T =LMG 30311 T =KCTC 62190 T ).