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Amphritea opalescens sp. nov., isolated from sediment adjacent to Fildes Peninsula, Antarctica
Author(s) -
Xiaoyan Han,
Jing Zhang,
Yanfeng Zhang,
Juanjuan Liu,
Wei Fang,
Zemin Fang,
Yazhong Xiao
Publication year - 2019
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.003359
Subject(s) - biology , 16s ribosomal rna , strain (injury) , phylogenetic tree , microbiology and biotechnology , bacteria , botany , gene , genetics , anatomy
A taxonomic study was carried out on a Gram-stain-negative bacterium, namely strain ANRC-JH13 T , isolated from a sediment sample collected at Jasper beach, adjacent to Fildes Peninsula, Antarctica. Cells of strain ANRC-JH13 T were non-spore-forming rods and motile by the way of flagellum. Strain ANRC-JH13 T was facultatively anaerobic, oxidase-positive, and catalase-positive. Growth of strain ANRC-JH13 T occurred at 10-42 °C (optimum, 28 °C), pH 4.0-11.0 (pH 7.0) and 0-12.0 % (w/v) NaCl (1.0-2.0 %). Its predominant fatty acids were C16 : 0 (21.7 %), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c; 38.3 %), and summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c; 20.1 %). Isoprenoid quinone Q-8 was the major respiratory quinone. Its major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, two unidentified aminolipids, and four unknown polar lipids. The DNA G+C content was 48 mol%. Strain ANRC-JH13 T showed the highest 16S rRNA gene sequence similarity to Amphritea balenae JAMM 1525 T (97.9 %), followed by Amphritea atlantica M41 T (97.8 %) and Amphritea japonica JAMM 1866 T (97.3 %), and formed a lineage within the genus Amphritea on the phylogenetic trees. However, the in silico average nucleotide identity values between strain ANRC-JH13 T and A. balenae JAMM 1525 T , A. atlantica M41 T , and A. japonica JAMM 1866 T were 74.0, 76.7, and 74.9 %, respectively. The in silico DNA-DNA hybridization values between them were 19.8, 20.6, and 19.4 %, respectively. Based on the results from phenotypic, chemotaxonomic, and phylogenetic analyses, strain ANRC-JH13 T is considered to represent a novel species of the genus Amphritea, for which the name Amphriteaopalescens sp. nov. is proposed. The type strain is ANRC-JH13 T (=MCCC 1K03512 T =KCTC 62532 T ).

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